PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016139
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 329aa    MW: 36684.9 Da    PI: 8.3661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016139genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
      Lus10016139 14 KGPWSPEEDAKLKDYIEKFGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding384e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Lus10016139  69 GEFSDDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.19962IPR017930Myb domain
SuperFamilySSF466896.12E-2711109IPR009057Homeodomain-like
SMARTSM007171.7E-121364IPR001005SANT/Myb domain
PfamPF002494.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241569IPR009057Homeodomain-like
CDDcd001671.02E-91662No hitNo description
PROSITE profilePS5129421.73163117IPR017930Myb domain
SMARTSM007178.4E-1267115IPR001005SANT/Myb domain
PfamPF002495.7E-1169111IPR001005SANT/Myb domain
CDDcd001671.93E-870113No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KFGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMSI  120
SPHNFPNKHH HPLQRSKPFH HFHPSSSSLV PQANFNFLSS FITSPPPITI TNGFDPMVNN  180
NFPSNPTTLL QTLQDGTSTS TSTLLSTKQL YNGTPSNNLL VFGSGGNDHQ VASCSSNSDG  240
SRGKDGGQQQ VKQEESNIYS QSYGGYGDHH QQKFMLSYGN GFDEFGGGGG VHLEEEVKKM  300
IINDQDHHDN SNHMVNVVDQ EKAMYYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314299.11e-98hypothetical protein POPTR_0009s01270g
RefseqXP_012064720.18e-99PREDICTED: transcription factor RAX2-like
TrEMBLA0A067LHA79e-99A0A067LHA7_JATCU; MYB family protein
TrEMBLB9HQM81e-98B9HQM8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01270.13e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-77myb domain protein 36